User guide
Contributing
NeuroML Documentation
GitHub
Index
A
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B
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C
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D
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E
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F
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G
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H
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I
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
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W
A
add() (neuroml.nml.nml.BaseWithoutId method)
add_all_to_document() (in module neuroml.utils)
AdExIaFCell (class in neuroml.nml.nml)
AlphaCondSynapse (class in neuroml.nml.nml)
AlphaCurrentSynapse (class in neuroml.nml.nml)
AlphaCurrSynapse (class in neuroml.nml.nml)
AlphaSynapse (class in neuroml.nml.nml)
Annotation (class in neuroml.nml.nml)
append() (neuroml.nml.nml.NeuroMLDocument method)
append_to_element() (in module neuroml.utils)
ArrayMorphLoader (class in neuroml.loaders)
ArrayMorphWriter (class in neuroml.writers)
B
Base (class in neuroml.nml.nml)
BaseCell (class in neuroml.nml.nml)
BaseCellMembPotCap (class in neuroml.nml.nml)
BaseConductanceBasedSynapse (class in neuroml.nml.nml)
BaseConductanceBasedSynapseTwo (class in neuroml.nml.nml)
BaseConnection (class in neuroml.nml.nml)
BaseConnectionNewFormat (class in neuroml.nml.nml)
BaseConnectionOldFormat (class in neuroml.nml.nml)
BaseCurrentBasedSynapse (class in neuroml.nml.nml)
BaseNonNegativeIntegerId (class in neuroml.nml.nml)
BaseProjection (class in neuroml.nml.nml)
basePyNNCell (class in neuroml.nml.nml)
basePyNNIaFCell (class in neuroml.nml.nml)
basePyNNIaFCondCell (class in neuroml.nml.nml)
BasePynnSynapse (class in neuroml.nml.nml)
BaseSynapse (class in neuroml.nml.nml)
BaseVoltageDepSynapse (class in neuroml.nml.nml)
BaseWithoutId (class in neuroml.nml.nml)
BiophysicalProperties (class in neuroml.nml.nml)
BiophysicalProperties2CaPools (class in neuroml.nml.nml)
BlockingPlasticSynapse (class in neuroml.nml.nml)
BlockMechanism (class in neuroml.nml.nml)
C
Case (class in neuroml.nml.nml)
Cell (class in neuroml.nml.nml)
Cell2CaPools (class in neuroml.nml.nml)
CellSet (class in neuroml.nml.nml)
ChannelDensity (class in neuroml.nml.nml)
ChannelDensityGHK (class in neuroml.nml.nml)
ChannelDensityGHK2 (class in neuroml.nml.nml)
ChannelDensityNernst (class in neuroml.nml.nml)
ChannelDensityNernstCa2 (class in neuroml.nml.nml)
ChannelDensityNonUniform (class in neuroml.nml.nml)
ChannelDensityNonUniformGHK (class in neuroml.nml.nml)
ChannelDensityNonUniformNernst (class in neuroml.nml.nml)
ChannelDensityVShift (class in neuroml.nml.nml)
ChannelPopulation (class in neuroml.nml.nml)
ClosedState (class in neuroml.nml.nml)
ComponentType (class in neuroml.nml.nml)
CompoundInput (class in neuroml.nml.nml)
CompoundInputDL (class in neuroml.nml.nml)
ConcentrationModel_D (class in neuroml.nml.nml)
ConditionalDerivedVariable (class in neuroml.nml.nml)
Connection (class in neuroml.nml.nml)
ConnectionWD (class in neuroml.nml.nml)
Constant (class in neuroml.nml.nml)
ContinuousConnection (class in neuroml.nml.nml)
ContinuousConnectionInstance (class in neuroml.nml.nml)
ContinuousConnectionInstanceW (class in neuroml.nml.nml)
ContinuousProjection (class in neuroml.nml.nml)
D
DecayingPoolConcentrationModel (class in neuroml.nml.nml)
DerivedVariable (class in neuroml.nml.nml)
DistalDetails (class in neuroml.nml.nml)
distance_to() (neuroml.nml.nml.Point3DWithDiam method)
DoubleSynapse (class in neuroml.nml.nml)
Dynamics (class in neuroml.nml.nml)
E
EIF_cond_alpha_isfa_ista (class in neuroml.nml.nml)
EIF_cond_exp_isfa_ista (class in neuroml.nml.nml)
ElectricalConnection (class in neuroml.nml.nml)
ElectricalConnectionInstance (class in neuroml.nml.nml)
ElectricalConnectionInstanceW (class in neuroml.nml.nml)
ElectricalProjection (class in neuroml.nml.nml)
ExpCondSynapse (class in neuroml.nml.nml)
ExpCurrSynapse (class in neuroml.nml.nml)
ExplicitInput (class in neuroml.nml.nml)
ExpOneSynapse (class in neuroml.nml.nml)
exportHdf5() (neuroml.nml.nml.ContinuousProjection method)
(neuroml.nml.nml.ElectricalProjection method)
(neuroml.nml.nml.InputList method)
(neuroml.nml.nml.Network method)
(neuroml.nml.nml.Population method)
(neuroml.nml.nml.Projection method)
Exposure (class in neuroml.nml.nml)
ExpThreeSynapse (class in neuroml.nml.nml)
ExpTwoSynapse (class in neuroml.nml.nml)
ExtracellularProperties (class in neuroml.nml.nml)
ExtracellularPropertiesLocal (class in neuroml.nml.nml)
F
FitzHughNagumo1969Cell (class in neuroml.nml.nml)
FitzHughNagumoCell (class in neuroml.nml.nml)
FixedFactorConcentrationModel (class in neuroml.nml.nml)
ForwardTransition (class in neuroml.nml.nml)
G
GapJunction (class in neuroml.nml.nml)
GateFractional (class in neuroml.nml.nml)
GateFractionalSubgate (class in neuroml.nml.nml)
GateHHInstantaneous (class in neuroml.nml.nml)
GateHHRates (class in neuroml.nml.nml)
GateHHRatesInf (class in neuroml.nml.nml)
GateHHRatesTau (class in neuroml.nml.nml)
GateHHRatesTauInf (class in neuroml.nml.nml)
GateHHTauInf (class in neuroml.nml.nml)
GateHHUndetermined (class in neuroml.nml.nml)
GateKS (class in neuroml.nml.nml)
get_actual_proximal() (neuroml.nml.nml.Cell method)
get_all_segments_in_group() (neuroml.nml.nml.Cell method)
get_by_id() (neuroml.nml.nml.Network method)
(neuroml.nml.nml.NeuroMLDocument method)
get_delay_in_ms() (neuroml.nml.nml.ConnectionWD method)
get_fraction_along() (neuroml.nml.nml.ExplicitInput method)
(neuroml.nml.nml.Input method)
get_members() (neuroml.nml.nml.BaseWithoutId method)
get_ordered_segments_in_groups() (neuroml.nml.nml.Cell method)
get_post_cell_id() (neuroml.nml.nml.Connection method)
(neuroml.nml.nml.ConnectionWD method)
(neuroml.nml.nml.ContinuousConnection method)
(neuroml.nml.nml.ElectricalConnection method)
get_post_fraction_along() (neuroml.nml.nml.Connection method)
(neuroml.nml.nml.ConnectionWD method)
(neuroml.nml.nml.ContinuousConnection method)
(neuroml.nml.nml.ElectricalConnection method)
get_post_info() (neuroml.nml.nml.Connection method)
(neuroml.nml.nml.ConnectionWD method)
(neuroml.nml.nml.ContinuousConnection method)
(neuroml.nml.nml.ElectricalConnection method)
get_post_segment_id() (neuroml.nml.nml.Connection method)
(neuroml.nml.nml.ConnectionWD method)
(neuroml.nml.nml.ContinuousConnection method)
(neuroml.nml.nml.ElectricalConnection method)
get_pre_cell_id() (neuroml.nml.nml.Connection method)
(neuroml.nml.nml.ConnectionWD method)
(neuroml.nml.nml.ContinuousConnection method)
(neuroml.nml.nml.ElectricalConnection method)
get_pre_fraction_along() (neuroml.nml.nml.Connection method)
(neuroml.nml.nml.ConnectionWD method)
(neuroml.nml.nml.ContinuousConnection method)
(neuroml.nml.nml.ElectricalConnection method)
get_pre_info() (neuroml.nml.nml.Connection method)
(neuroml.nml.nml.ConnectionWD method)
(neuroml.nml.nml.ContinuousConnection method)
(neuroml.nml.nml.ElectricalConnection method)
get_pre_segment_id() (neuroml.nml.nml.Connection method)
(neuroml.nml.nml.ConnectionWD method)
(neuroml.nml.nml.ContinuousConnection method)
(neuroml.nml.nml.ElectricalConnection method)
get_segment() (neuroml.nml.nml.Cell method)
get_segment_group() (neuroml.nml.nml.Cell method)
get_segment_groups_by_substring() (neuroml.nml.nml.Cell method)
get_segment_id() (neuroml.nml.nml.ExplicitInput method)
(neuroml.nml.nml.Input method)
get_segment_ids_vs_segments() (neuroml.nml.nml.Cell method)
get_segment_length() (neuroml.nml.nml.Cell method)
get_segment_surface_area() (neuroml.nml.nml.Cell method)
get_segment_volume() (neuroml.nml.nml.Cell method)
get_segments_by_substring() (neuroml.nml.nml.Cell method)
get_size() (neuroml.nml.nml.Population method)
get_summary() (in module neuroml.utils)
get_target_cell_id() (neuroml.nml.nml.ExplicitInput method)
(neuroml.nml.nml.Input method)
get_target_population() (neuroml.nml.nml.ExplicitInput method)
get_weight() (neuroml.nml.nml.ContinuousConnectionInstanceW method)
(neuroml.nml.nml.ElectricalConnectionInstanceW method)
(neuroml.nml.nml.InputW method)
GradedSynapse (class in neuroml.nml.nml)
GridLayout (class in neuroml.nml.nml)
H
has_segment_fraction_info() (in module neuroml.utils)
HH_cond_exp (class in neuroml.nml.nml)
HHRate (class in neuroml.nml.nml)
HHTime (class in neuroml.nml.nml)
HHVariable (class in neuroml.nml.nml)
I
IafCell (class in neuroml.nml.nml)
IafRefCell (class in neuroml.nml.nml)
IafTauCell (class in neuroml.nml.nml)
IafTauRefCell (class in neuroml.nml.nml)
IF_cond_alpha (class in neuroml.nml.nml)
IF_cond_exp (class in neuroml.nml.nml)
IF_curr_alpha (class in neuroml.nml.nml)
IF_curr_exp (class in neuroml.nml.nml)
Include (class in neuroml.nml.nml)
IncludeType (class in neuroml.nml.nml)
info() (neuroml.nml.nml.BaseWithoutId method)
InhomogeneousParameter (class in neuroml.nml.nml)
InhomogeneousValue (class in neuroml.nml.nml)
InitMembPotential (class in neuroml.nml.nml)
Input (class in neuroml.nml.nml)
InputList (class in neuroml.nml.nml)
InputW (class in neuroml.nml.nml)
Instance (class in neuroml.nml.nml)
InstanceRequirement (class in neuroml.nml.nml)
IntracellularProperties (class in neuroml.nml.nml)
IntracellularProperties2CaPools (class in neuroml.nml.nml)
IonChannel (class in neuroml.nml.nml)
IonChannelHH (class in neuroml.nml.nml)
IonChannelKS (class in neuroml.nml.nml)
IonChannelScalable (class in neuroml.nml.nml)
IonChannelVShift (class in neuroml.nml.nml)
is_valid_neuroml2() (in module neuroml.utils)
Izhikevich2007Cell (class in neuroml.nml.nml)
IzhikevichCell (class in neuroml.nml.nml)
L
Layout (class in neuroml.nml.nml)
LEMS_Property (class in neuroml.nml.nml)
length (neuroml.nml.nml.Segment property)
LinearGradedSynapse (class in neuroml.nml.nml)
load() (neuroml.loaders.ArrayMorphLoader class method)
(neuroml.loaders.NeuroMLHdf5Loader class method)
(neuroml.loaders.NeuroMLLoader class method)
load_swc_single() (neuroml.loaders.SWCLoader class method)
Location (class in neuroml.nml.nml)
M
main() (in module neuroml.utils)
Member (class in neuroml.nml.nml)
MembraneProperties (class in neuroml.nml.nml)
MembraneProperties2CaPools (class in neuroml.nml.nml)
module
neuroml.loaders
neuroml.utils
neuroml.writers
Morphology (class in neuroml.nml.nml)
N
NamedDimensionalType (class in neuroml.nml.nml)
NamedDimensionalVariable (class in neuroml.nml.nml)
Network (class in neuroml.nml.nml)
neuroml.loaders
module
neuroml.utils
module
neuroml.writers
module
NeuroMLDocument (class in neuroml.nml.nml)
NeuroMLHdf5Loader (class in neuroml.loaders)
NeuroMLHdf5Writer (class in neuroml.writers)
NeuroMLLoader (class in neuroml.loaders)
NeuroMLWriter (class in neuroml.writers)
num_segments (neuroml.nml.nml.Morphology property)
O
OpenState (class in neuroml.nml.nml)
P
Parameter (class in neuroml.nml.nml)
Path (class in neuroml.nml.nml)
PinskyRinzelCA3Cell (class in neuroml.nml.nml)
PlasticityMechanism (class in neuroml.nml.nml)
Point3DWithDiam (class in neuroml.nml.nml)
PoissonFiringSynapse (class in neuroml.nml.nml)
Population (class in neuroml.nml.nml)
print_() (in module neuroml.loaders)
print_summary() (in module neuroml.utils)
Projection (class in neuroml.nml.nml)
Property (class in neuroml.nml.nml)
ProximalDetails (class in neuroml.nml.nml)
PulseGenerator (class in neuroml.nml.nml)
PulseGeneratorDL (class in neuroml.nml.nml)
Q
Q10ConductanceScaling (class in neuroml.nml.nml)
Q10Settings (class in neuroml.nml.nml)
R
RampGenerator (class in neuroml.nml.nml)
RampGeneratorDL (class in neuroml.nml.nml)
RandomLayout (class in neuroml.nml.nml)
ReactionScheme (class in neuroml.nml.nml)
read_neuroml2_file() (in module neuroml.loaders)
read_neuroml2_string() (in module neuroml.loaders)
Region (class in neuroml.nml.nml)
Requirement (class in neuroml.nml.nml)
Resistivity (class in neuroml.nml.nml)
ReverseTransition (class in neuroml.nml.nml)
S
Segment (class in neuroml.nml.nml)
SegmentEndPoint (class in neuroml.nml.nml)
SegmentGroup (class in neuroml.nml.nml)
SegmentParent (class in neuroml.nml.nml)
SilentSynapse (class in neuroml.nml.nml)
SineGenerator (class in neuroml.nml.nml)
SineGeneratorDL (class in neuroml.nml.nml)
Space (class in neuroml.nml.nml)
SpaceStructure (class in neuroml.nml.nml)
Species (class in neuroml.nml.nml)
SpecificCapacitance (class in neuroml.nml.nml)
Spike (class in neuroml.nml.nml)
SpikeArray (class in neuroml.nml.nml)
SpikeGenerator (class in neuroml.nml.nml)
SpikeGeneratorPoisson (class in neuroml.nml.nml)
SpikeGeneratorRandom (class in neuroml.nml.nml)
SpikeGeneratorRefPoisson (class in neuroml.nml.nml)
SpikeSourcePoisson (class in neuroml.nml.nml)
SpikeThresh (class in neuroml.nml.nml)
Standalone (class in neuroml.nml.nml)
StateVariable (class in neuroml.nml.nml)
SubTree (class in neuroml.nml.nml)
summary() (neuroml.nml.nml.Cell method)
(neuroml.nml.nml.NeuroMLDocument method)
surface_area (neuroml.nml.nml.Segment property)
SWCLoader (class in neuroml.loaders)
SynapticConnection (class in neuroml.nml.nml)
T
TauInfTransition (class in neuroml.nml.nml)
TimeDerivative (class in neuroml.nml.nml)
TimedSynapticInput (class in neuroml.nml.nml)
TransientPoissonFiringSynapse (class in neuroml.nml.nml)
U
UnstructuredLayout (class in neuroml.nml.nml)
V
validate_neuroml2() (in module neuroml.utils)
validate_Nml2Quantity_resistivity() (neuroml.nml.nml.Resistivity method)
validate_Nml2Quantity_resistivity_patterns_ (neuroml.nml.nml.Resistivity attribute)
VariableParameter (class in neuroml.nml.nml)
VoltageClamp (class in neuroml.nml.nml)
VoltageClampTriple (class in neuroml.nml.nml)
volume (neuroml.nml.nml.Segment property)
W
write() (neuroml.writers.ArrayMorphWriter class method)
(neuroml.writers.NeuroMLHdf5Writer class method)
(neuroml.writers.NeuroMLWriter class method)